7E1B image
Entry Detail
PDB ID:
7E1B
Title:
Crystal structure of VbrR-DNA complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-02-01
Release Date:
2022-02-09
Method Details:
Experimental Method:
Resolution:
4.59 Å
R-Value Free:
0.32
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA-binding response regulator
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:220
Number of Molecules:8
Biological Source:Vibrio parahaemolyticus
Polymer Type:polydeoxyribonucleotide
Description:DNA (26-MER)
Chain IDs:I (auth: Y), K (auth: I)
Chain Length:26
Number of Molecules:2
Biological Source:Vibrio parahaemolyticus
Polymer Type:polydeoxyribonucleotide
Description:DNA (26-MER)
Chain IDs:J (auth: Z), L (auth: J)
Chain Length:26
Number of Molecules:2
Biological Source:Vibrio parahaemolyticus
Ligand Molecules
Primary Citation
Structural basis of phosphorylation-induced activation of the response regulator VbrR.
Acta Biochim.Biophys.Sin. ? ? ? (2023)
PMID: 36647726 DOI: 10.3724/abbs.2022200

Abstact

Two-component systems typically consist of a paired histidine kinase and response regulator and couple environmental changes to adaptive responses. The response regulator VbrR from Vibrio parahaemolyticus, a member of the OmpR/PhoB family, regulates virulence and antibiotic resistance genes. The activation mechanism of VbrR remains unclear. Here, we report the crystal structures of full-length VbrR in complex with DNA in the active conformation and the N-terminal receiver domain (RD) and the C-terminal DNA-binding domain (DBD) in both active and inactive conformations. Structural and biochemical analyses suggest that unphosphorylated VbrR adopts mainly as inactive dimers through the DBD at the autoinhibitory state. The RD undergoes a monomer-to-dimer transition upon phosphorylation, which further induces the transition of DBD from an autoinhibitory dimer to an active dimer and enables its binding with target DNA. Our study suggests a new model for phosphorylation-induced activation of response regulators and sheds light on the pathogenesis of V. parahaemolyticus.

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