7E0D image
Entry Detail
PDB ID:
7E0D
Keywords:
Title:
Structure of L-glutamate oxidase R305E mutant in complex with L-arginine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-01-27
Release Date:
2021-04-07
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:L-glutamate oxidase
Mutations:R305E
Chain IDs:A
Chain Length:687
Number of Molecules:1
Biological Source:Streptomyces sp. X-119-6
Primary Citation
A new l-arginine oxidase engineered from l-glutamate oxidase.
Protein Sci. 30 1044 1055 (2021)
PMID: 33764624 DOI: 10.1002/pro.4070

Abstact

The alternation of substrate specificity expands the application range of enzymes in industrial, medical, and pharmaceutical fields. l-Glutamate oxidase (LGOX) from Streptomyces sp. X-119-6 catalyzes the oxidative deamination of l-glutamate to produce 2-ketoglutarate with ammonia and hydrogen peroxide. LGOX shows strict substrate specificity for l-glutamate. Previous studies on LGOX revealed that Arg305 in its active site recognizes the side chain of l-glutamate, and replacement of Arg305 by other amino acids drastically changes the substrate specificity of LGOX. Here we demonstrate that the R305E mutant variant of LGOX exhibits strict specificity for l-arginine. The oxidative deamination activity of LGOX to l-arginine is higher than that of l-arginine oxidase form from Pseudomonas sp. TPU 7192. X-ray crystal structure analysis revealed that the guanidino group of l-arginine is recognized not only by Glu305 but also Asp433, Trp564, and Glu617, which interact with Arg305 in wild-type LGOX. Multiple interactions by these residues provide strict specificity and high activity of LGOX R305E toward l-arginine. LGOX R305E is a thermostable and pH stable enzyme. The amount of hydrogen peroxide, which is a byproduct of oxidative deamination of l-arginine by LGOX R305E, is proportional to the concentration of l-arginine in a range from 0 to 100 μM. The linear relationship is maintained around 1 μM of l-arginine. Thus, LGOX R305E is suitable for the determination of l-arginine.

Legend

Protein

Chemical

Disease

Primary Citation of related structures