7DZY image
Entry Detail
PDB ID:
7DZY
EMDB ID:
Keywords:
Title:
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
Biological Source:
PDB Version:
Deposition Date:
2021-01-26
Release Date:
2021-06-02
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:D614G, R682G, R683S, R685G, K986P, V987P
Chain IDs:A, B, C
Chain Length:1249
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:Fab Heavy chain of enhancing antibody 2490
Chain IDs:D (auth: H), F (auth: M), H (auth: O)
Chain Length:225
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab light chain of enhancing antibody 2490
Chain IDs:E (auth: L), G (auth: N), I (auth: P)
Chain Length:266
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Antibodies against the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein prevent SARS-CoV-2 infection. However, the effects of antibodies against other spike protein domains are largely unknown. Here, we screened a series of anti-spike monoclonal antibodies from coronavirus disease 2019 (COVID-19) patients and found that some of antibodies against the N-terminal domain (NTD) induced the open conformation of RBD and thus enhanced the binding capacity of the spike protein to ACE2 and infectivity of SARS-CoV-2. Mutational analysis revealed that all of the infectivity-enhancing antibodies recognized a specific site on the NTD. Structural analysis demonstrated that all infectivity-enhancing antibodies bound to NTD in a similar manner. The antibodies against this infectivity-enhancing site were detected at high levels in severe patients. Moreover, we identified antibodies against the infectivity-enhancing site in uninfected donors, albeit at a lower frequency. These findings demonstrate that not only neutralizing antibodies but also enhancing antibodies are produced during SARS-CoV-2 infection.

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Disease

Primary Citation of related structures