7DZF image
Deposition Date 2021-01-25
Release Date 2022-07-27
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7DZF
Keywords:
Title:
Intermediate of FABP with a delay time of 10 ns
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fatty acid-binding protein, liver
Gene (Uniprot):FABP1
Mutagens:C69A, L71M
Chain IDs:A, B
Chain Length:137
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem. 14 1054 1060 (2022)
PMID: 35851837 DOI: 10.1038/s41557-022-00992-3

Abstact

One of the primary objectives in chemistry research is to observe atomic motions during reactions in real time. Although X-ray free-electron lasers (XFELs) have facilitated the capture of reaction intermediates using time-resolved serial femtosecond crystallography (TR-SFX), only a few natural photoactive proteins have been investigated using this method, mostly due to the lack of suitable phototriggers. Here we report the genetic encoding of a xanthone amino acid (FXO), as an efficient phototrigger, into a rationally designed human liver fatty-acid binding protein mutant (termed XOM), which undergoes photo-induced C-H bond transformation with high selectivity and quantum efficiency. We solved the structures of XOM before and 10-300 ns after flash illumination, at 1.55-1.70 Å resolutions, and captured the elusive excited-state intermediates responsible for precise C-H bond activation. We expect that most redox enzymes can now be investigated by TR-SFX, using our method, to reveal reaction intermediates key for their efficiency and selectivity.

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Primary Citation of related structures
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