7DZ8 image
Deposition Date 2021-01-23
Release Date 2021-06-30
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7DZ8
Keywords:
Title:
State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.16 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):Lhca1
Chain IDs:N (auth: 1), O (auth: a)
Chain Length:228
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):CHLRE_12g508750v5
Chain IDs:P (auth: 2)
Chain Length:246
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:Q (auth: 3)
Chain Length:298
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-1
Chain IDs:R (auth: 4)
Chain Length:264
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-3
Chain IDs:S (auth: 5)
Chain Length:257
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-5
Chain IDs:T (auth: 6)
Chain Length:257
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):Lhca
Chain IDs:U (auth: 7)
Chain Length:241
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-4
Chain IDs:V (auth: 8)
Chain Length:243
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):CHLRE_07g344950v5
Chain IDs:W (auth: 9)
Chain Length:213
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A
Chain Length:228
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B
Chain Length:735
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C
Chain Length:81
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II, chloroplastic
Gene (Uniprot):psaD
Chain IDs:D
Chain Length:196
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV, chloroplastic
Gene (Uniprot):PSAE
Chain IDs:E
Chain Length:97
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III, chloroplastic
Gene (Uniprot):PSAF
Chain IDs:F
Chain Length:227
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit V, chloroplastic
Gene (Uniprot):PSAG
Chain IDs:G
Chain Length:126
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VI, chloroplastic
Gene (Uniprot):PSAH
Chain IDs:H
Chain Length:130
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):CHLRE_03g165100v5
Chain IDs:I
Chain Length:106
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J
Chain Length:41
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit psaK, chloroplastic
Gene (Uniprot):PSAK
Chain IDs:K
Chain Length:113
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):CHLRE_12g486300v5
Chain IDs:L
Chain Length:196
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I subunit O
Gene (Uniprot):CHLRE_07g334550v5
Chain IDs:M (auth: O)
Chain Length:126
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):Lhcb3
Chain IDs:BA (auth: V)
Chain Length:268
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-3
Chain IDs:X, CA (auth: W)
Chain Length:249
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-1.3
Chain IDs:Y, Z, AA (auth: U)
Chain Length:257
Number of Molecules:3
Biological Source:Chlamydomonas reinhardtii
Primary Citation
Structural basis of LhcbM5-mediated state transitions in green algae.
Nat.Plants 7 1119 1131 (2021)
PMID: 34239095 DOI: 10.1038/s41477-021-00960-8

Abstact

In green algae and plants, state transitions serve as a short-term light-acclimation process in the regulation of the light-harvesting capacity of photosystems I and II (PSI and PSII, respectively). During the process, a portion of light-harvesting complex II (LHCII) is phosphorylated, dissociated from PSII and binds with PSI to form the supercomplex PSI-LHCI-LHCII. Here, we report high-resolution structures of PSI-LHCI-LHCII from Chlamydomonas reinhardtii, revealing the mechanism of assembly between the PSI-LHCI complex and two phosphorylated LHCII trimers containing all four types of LhcbM protein. Two specific LhcbM isoforms, namely LhcbM1 and LhcbM5, directly interact with the PSI core through their phosphorylated amino terminal regions. Furthermore, biochemical and functional studies on mutant strains lacking either LhcbM1 or LhcbM5 indicate that only LhcbM5 is indispensable in supercomplex formation. The results unravel the specific interactions and potential excitation energy transfer routes between green algal PSI and two phosphorylated LHCIIs.

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Primary Citation of related structures