7DXA image
Deposition Date 2021-01-18
Release Date 2021-06-30
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7DXA
Keywords:
Title:
PSII intermediate Psb28-RC47
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center Psb28 protein
Gene (Uniprot):psb28
Chain IDs:A
Chain Length:360
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tsl0063 protein
Gene (Uniprot):psb34
Chain IDs:B
Chain Length:56
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Polymer Type:polypeptide(L)
Molecule:unidentified transmembrane protein
Chain IDs:N (auth: C)
Chain Length:23
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:C (auth: a)
Chain Length:360
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:D (auth: b)
Chain Length:56
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:E (auth: d)
Chain Length:342
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:F (auth: e)
Chain Length:84
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:G (auth: f)
Chain Length:45
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:H (auth: h)
Chain Length:65
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:I (auth: i)
Chain Length:38
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:J (auth: l)
Chain Length:37
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:K (auth: m)
Chain Length:36
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:L (auth: t)
Chain Length:32
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein X
Gene (Uniprot):psbX
Chain IDs:M (auth: x)
Chain Length:40
Number of Molecules:1
Biological Source:Thermosynechococcus vulcanus
Primary Citation
Structural insights into cyanobacterial photosystem II intermediates associated with Psb28 and Tsl0063.
Nat.Plants 7 1132 1142 (2021)
PMID: 34226692 DOI: 10.1038/s41477-021-00961-7

Abstact

Photosystem II (PSII) is a multisubunit pigment-protein complex and catalyses light-induced water oxidation, leading to the conversion of light energy into chemical energy and the release of dioxygen. We analysed the structures of two Psb28-bound PSII intermediates, Psb28-RC47 and Psb28-PSII, purified from a psbV-deletion strain of the thermophilic cyanobacterium Thermosynechococcus vulcanus, using cryo-electron microscopy. Both Psb28-RC47 and Psb28-PSII bind one Psb28, one Tsl0063 and an unknown subunit. Psb28 is located at the cytoplasmic surface of PSII and interacts with D1, D2 and CP47, whereas Tsl0063 is a transmembrane subunit and binds at the side of CP47/PsbH. Substantial structural perturbations are observed at the acceptor side, which result in conformational changes of the quinone (QB) and non-haem iron binding sites and thus may protect PSII from photodamage during assembly. These results provide a solid structural basis for understanding the assembly process of native PSII.

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