7DWB image
Entry Detail
PDB ID:
7DWB
EMDB ID:
Title:
Human Pannexin1 model
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-01-17
Release Date:
2021-05-26
Method Details:
Experimental Method:
Resolution:
3.15 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pannexin-1
Chain IDs:A, B, C, D, E, F, G
Chain Length:433
Number of Molecules:7
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the full-length human Pannexin1 channel and insights into its role in pyroptosis.
Cell Discov 7 30 30 (2021)
PMID: 33947837 DOI: 10.1038/s41421-021-00259-0

Abstact

Pannexin1 (PANX1) is a large-pore ATP efflux channel with a broad distribution, which allows the exchange of molecules and ions smaller than 1 kDa between the cytoplasm and extracellular space. In this study, we show that in human macrophages PANX1 expression is upregulated by diverse stimuli that promote pyroptosis, which is reminiscent of the previously reported lipopolysaccharide-induced upregulation of PANX1 during inflammasome activation. To further elucidate the function of PANX1, we propose the full-length human Pannexin1 (hPANX1) model through cryo-electron microscopy (cryo-EM) and molecular dynamics (MD) simulation studies, establishing hPANX1 as a homo-heptamer and revealing that both the N-termini and C-termini protrude deeply into the channel pore funnel. MD simulations also elucidate key energetic features governing the channel that lay a foundation to understand the channel gating mechanism. Structural analyses, functional characterizations, and computational studies support the current hPANX1-MD model, suggesting the potential role of hPANX1 in pyroptosis during immune responses.

Legend

Protein

Chemical

Disease

Primary Citation of related structures