7DVS image
Deposition Date 2021-01-15
Release Date 2021-09-29
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7DVS
Keywords:
Title:
Crystal structure of Apo (heme-free) PefR
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MarR family transcriptional regulator
Gene (Uniprot):AX245_08385, C4618_02920, C6N07_07865, NCTC6175_00806, QP229_09315, WA45_06195
Chain IDs:A, B, C, D
Chain Length:162
Number of Molecules:4
Biological Source:Streptococcus agalactiae
Ligand Molecules
Primary Citation
Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol 4 467 467 (2021)
PMID: 33850260 DOI: 10.1038/s42003-021-01987-5

Abstact

Hemes (iron-porphyrins) are critical for biological processes in all organisms. Hemolytic bacteria survive by acquiring b-type heme from hemoglobin in red blood cells from their animal hosts. These bacteria avoid the cytotoxicity of excess heme during hemolysis by expressing heme-responsive sensor proteins that act as transcriptional factors to regulate the heme efflux system in response to the cellular heme concentration. Here, the underlying regulatory mechanisms were investigated using crystallographic, spectroscopic, and biochemical studies to understand the structural basis of the heme-responsive sensor protein PefR from Streptococcus agalactiae, a causative agent of neonatal life-threatening infections. Structural comparison of heme-free PefR, its complex with a target DNA, and heme-bound PefR revealed that unique heme coordination controls a >20 Å structural rearrangement of the DNA binding domains to dissociate PefR from the target DNA. We also found heme-bound PefR stably binds exogenous ligands, including carbon monoxide, a by-product of the heme degradation reaction.

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Primary Citation of related structures