7DVL image
Deposition Date 2021-01-13
Release Date 2021-04-28
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7DVL
Keywords:
Title:
Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Subtype A3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bont/A3
Gene (Uniprot):bont
Mutagens:E226Q, Y368F
Chain IDs:A, B
Chain Length:419
Number of Molecules:2
Biological Source:Clostridium botulinum
Ligand Molecules
Primary Citation
Crystal structure of the catalytic domain of botulinum neurotoxin subtype A3.
J.Biol.Chem. 296 100684 100684 (2021)
PMID: 33891946 DOI: 10.1016/j.jbc.2021.100684

Abstact

Botulinum neurotoxins (BoNTs) are among the most widely used therapeutic proteins; however, only two subtypes within the seven serotypes, BoNT/A1 and BoNT/B1, are currently used for medical and cosmetic applications. Distinct catalytic properties, substrate specificities, and duration of enzymatic activities potentially make other subtypes very attractive candidates to outperform conventional BoNTs in particular therapeutic applications. For example, BoNT/A3 has a significantly shorter duration of action than other BoNT/A subtypes. Notably, BoNT/A3 is the subtype with the least conserved catalytic domain among BoNT/A subtypes. This suggests that the sequence differences, many of which concern the α-exosite, contribute to the observed functional differences in toxin persistence by affecting the binding of the substrate SNAP-25 and/or the stability of the catalytic domain fold. To identify the molecular determinants accounting for the differences in the persistence observed for BoNT/A subtypes, we determined the crystal structure of the catalytic domain of BoNT/A3 (LC/A3). The structure of LC/A3 was found to be very similar to that of LC/A1, suggesting that the overall mode of SNAP-25 binding is common between these two proteins. However, circular dichroism (CD) thermal unfolding experiments demonstrated that LC/A3 is significantly less stable than LC/A1, implying that this might contribute to the reduced toxin persistence of BoNT/A3. These findings could be of interest in developing next-generation therapeutic toxins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures