7DRU image
Deposition Date 2020-12-29
Release Date 2021-11-10
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7DRU
Keywords:
Title:
Crystal Structure of the Dog Lipocalin Allergen Can f 1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major allergen Can f 1
Mutagens:C118A
Chain IDs:A, B, C, D, E, F, G
Chain Length:163
Number of Molecules:7
Biological Source:Canis lupus familiaris
Primary Citation
Structure-based prediction of the IgE epitopes of the major dog allergen Can f 1.
Febs J. 289 1668 1679 (2022)
PMID: 34699686 DOI: 10.1111/febs.16252

Abstact

Allergy to dogs has become increasingly prominent worldwide. Seven dog allergens have been identified, including Canis familiaris allergen 1-7 (Can f 1-7). Although Can f 1 is a major dog allergen sensitized to 50-75% of dog-allergic subjects, its IgE epitopes have not been identified. The structural analysis of an allergen is important to identify conformational epitopes. In this study, we generated a recombinant Can f 1 protein and determined its crystal structure using X-ray crystallography. Can f 1 had a typical lipocalin fold, which is composed of an eight-stranded β-barrel and α-helix, and has high similarity to Can f 2, Can f 4, and Can f 6 in overall structure. However, the localizations of surface charges on these proteins were quite different. Based on sequence alignment and tertiary structure, we predicted five critical residues (His86, Glu98, Arg111, Glu138, and Arg152) for the IgE epitopes. The relevance of these residues to IgE reactivity was assessed by generating Can f 1 mutants with these residues substituted for alanine. Although the effects of the mutation on IgE binding depended on the sera of dog-allergic patients, H86A and R152A mutants showed reduced IgE reactivity compared with wild-type Can f 1. These results suggest that Can f 1 residues His86 and Arg152 are candidates for the IgE conformational epitope.

Legend

Protein

Chemical

Disease

Primary Citation of related structures