7DQV image
Entry Detail
PDB ID:
7DQV
Title:
Crystal structure of a CmABCB1 mutant
Biological Source:
PDB Version:
Deposition Date:
2020-12-24
Release Date:
2021-03-24
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Probable ATP-dependent transporter ycf16
Mutations:G132V
Chain IDs:A
Chain Length:620
Number of Molecules:1
Biological Source:Cyanidioschyzon merolae (strain 10D)
Primary Citation
The crystal structure of the CmABCB1 G132V mutant, which favors the outward-facing state, reveals the mechanism of the pivotal joint between TM1 and TM3.
Protein Sci. 30 1064 1071 (2021)
PMID: 33683740 DOI: 10.1002/pro.4058

Abstact

CmABCB1 is a homologue of human P-glycoprotein, which extrudes various substrates by iterative cycles of conformational changes between the inward- and outward-facing states. Comparison of the inward- and outward-facing structures of CmABCB1 suggested that pivotal joints in the transmembrane domain regulate the tilt of transmembrane helices. Transmembrane helix 1 (TM1) forms a tight helix-helix contact with TM3 at the TM1-3 joint. Mutation of Gly132 to valine at the TM1-3 joint, G132V, caused a 10-fold increase in ATPase activity, but the mechanism underlying this change remains unclear. Here, we report a crystal structure of the outward-facing state of the CmABCB1 G132V mutant at a 2.15 Å resolution. We observed structural displacements between the outward-facing states of G132V and the previous one at the region around the TM1-3 joint, and a significant expansion at the extracellular gate. We hypothesize that steric hindrance caused by the Val substitution shifted the conformational equilibrium toward the outward-facing state, favoring the dimeric state of the nucleotide-binding domains and thereby increasing the ATPase activity of the G132V mutant.

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