7DPG image
Deposition Date 2020-12-18
Release Date 2021-05-05
Last Version Date 2024-03-27
Entry Detail
PDB ID:
7DPG
Keywords:
Title:
Cryo-EM structure of Coxsackievirus B1 empty particle
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Virion protein 1
Chain IDs:A (auth: 1)
Chain Length:278
Number of Molecules:1
Biological Source:Coxsackievirus B1
Polymer Type:polypeptide(L)
Molecule:VP2
Chain IDs:B (auth: 2)
Chain Length:263
Number of Molecules:1
Biological Source:Coxsackievirus B1
Polymer Type:polypeptide(L)
Molecule:VP3
Chain IDs:C (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Coxsackievirus B1
Ligand Molecules
Primary Citation
Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe 29 448 462.e5 (2021)
PMID: 33539764 DOI: 10.1016/j.chom.2021.01.001

Abstact

Enterovirus uncoating receptors bind at the surface depression ("canyon") that encircles each capsid vertex causing the release of a host-derived lipid called "pocket factor" that is buried in a hydrophobic pocket formed by the major viral capsid protein, VP1. Coxsackievirus and adenovirus receptor (CAR) is a universal uncoating receptor of group B coxsackieviruses (CVB). Here, we present five high-resolution cryoEM structures of CVB representing different stages of virus infection. Structural comparisons show that the CAR penetrates deeper into the canyon than other uncoating receptors, leading to a cascade of events: collapse of the VP1 hydrophobic pocket, high-efficiency release of the pocket factor and viral uncoating and genome release under neutral pH, as compared with low pH. Furthermore, we identified a potent therapeutic antibody that can neutralize viral infection by interfering with virion-CAR interactions, destabilizing the capsid and inducing virion disruption. Together, these results define the structural basis of CVB cell entry and antibody neutralization.

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