ISDA: 7DOK

Deposition Date 2020-12-14

Release Date 2021-12-15

Last Version Date 2025-07-02

Entry Detail

PDB ID:

7DOK

Keywords:

VIRAL PROTEIN

Title:

Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.73 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase
Gene (Uniprot):rep
Chain IDs:C (auth: A)
Chain Length:943
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 8
Gene (Uniprot):rep
Chain IDs:D (auth: B), F (auth: G)
Chain Length:199
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 7
Gene (Uniprot):rep
Chain IDs:E (auth: C)
Chain Length:84
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716 EC:2.7.7.48

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*CP*UP*AP*UP*GP*UP*GP*AP*GP*AP*UP*UP*AP*AP*GP*UP*UP*AP*U)-3')
Chain IDs:A (auth: P)
Chain Length:20
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*CP*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP*UP*CP*UP*CP*AP*CP*AP*UP*AP*GP*C)-3')
Chain IDs:B (auth: T)
Chain Length:24
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Ligand Molecules