ISDA: 7DML

Deposition Date 2020-12-04

Release Date 2021-12-15

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7DML

Keywords:

HYDROLASE

Title:

OXA-48 carbapenemase in complex with (R)-2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acrylic acid

Biological Source:

Source Organism:

Klebsiella pneumoniae (Taxon ID: 573)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.94 Å

R-Value Free:

0.17

R-Value Work:

0.13

R-Value Observed:

0.13

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Gene (Uniprot):OXA-48
Chain IDs:A, B, C, D
Chain Length:265
Number of Molecules:4
Biological Source:Klebsiella pneumoniae

UniProt ID:Q6XEC0 Pfam ID:PF00905 EC:3.5.2.6

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
KCX	A	LYS	modified residue

Ligand Molecules

H9O

Primary Citation

Design and enantioselective synthesis of 3-(alpha-acrylic acid) benzoxaboroles to combat carbapenemase resistance

Xiao, Y.C, Chen, X.P, Deng, J, Yan, Y.H, Zhu, K.R, Li, G, Yu, J.L, Brem, J, Chen, F, Schofield, C.J, Li, G.B.Show

Chem.Commun.(Camb.) 57 7709 7712 (2021)

DOI: 10.1039/D1CC03026D

Primary Citation of related structures

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