7DM1 image
Deposition Date 2020-12-01
Release Date 2020-12-23
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7DM1
Title:
crystal structure of the M.tuberculosis phosphate ABC transport receptor PstS-1 in complex with Fab p4-36
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphate-binding protein PstS 1
Gene (Uniprot):pstS1
Chain IDs:A (auth: B), B (auth: A)
Chain Length:359
Number of Molecules:2
Biological Source:Mycobacterium tuberculosis H37Rv
Polymer Type:polypeptide(L)
Molecule:light chain
Chain IDs:C, E
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:heavy chain
Chain IDs:D, F
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Human antibodies targeting a Mycobacterium transporter protein mediate protection against tuberculosis.
Nat Commun 12 602 602 (2021)
PMID: 33504803 DOI: 10.1038/s41467-021-20930-0

Abstact

Mycobacterium tuberculosis (Mtb) exposure drives antibody responses, but whether patients with active tuberculosis elicit protective antibodies, and against which antigens, is still unclear. Here we generate monoclonal antibodies from memory B cells of one patient to investigate the B cell responses during active infection. The antibodies, members of four distinct B cell clones, are directed against the Mtb phosphate transporter subunit PstS1. Antibodies p4-36 and p4-163 reduce Mycobacterium bovis-BCG and Mtb levels in an ex vivo human whole blood growth inhibition assay in an FcR-dependent manner; meanwhile, germline versions of p4-36 and p4-163 do not bind Mtb. Crystal structures of p4-36 and p4-170, complexed to PstS1, are determined at 2.1 Å and 2.4 Å resolution, respectively, to reveal two distinctive PstS1 epitopes. Lastly, a prophylactic p4-36 and p4-163 treatment in Mtb-infected Balb/c mice reduces bacterial lung burden by 50%. Our study shows that inhibitory anti-PstS1 B cell responses arise during active tuberculosis.

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Primary Citation of related structures