7DKZ image
Entry Detail
PDB ID:
7DKZ
Keywords:
Title:
Structure of plant photosystem I-light harvesting complex I supercomplex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-11-25
Release Date:
2021-03-31
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lhca1
Chain IDs:A (auth: 1)
Chain Length:195
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:B (auth: 2)
Chain Length:269
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein 3, chloroplastic
Chain IDs:C (auth: 3)
Chain Length:275
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein P4, chloroplastic
Chain IDs:D (auth: 4)
Chain Length:198
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A1
Chain IDs:E (auth: A)
Chain Length:758
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A2
Chain IDs:F (auth: B)
Chain Length:734
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I iron-sulfur center
Chain IDs:G (auth: C)
Chain Length:81
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PsaD
Chain IDs:H (auth: D)
Chain Length:143
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PsaE
Chain IDs:I (auth: E)
Chain Length:66
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PSI-F
Chain IDs:J (auth: F)
Chain Length:154
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PsaG
Chain IDs:K (auth: G)
Chain Length:97
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PsaH
Chain IDs:L (auth: H)
Chain Length:88
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit VIII
Chain IDs:M (auth: I)
Chain Length:40
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IX
Chain IDs:N (auth: J)
Chain Length:42
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PSI-K
Chain IDs:P (auth: K)
Chain Length:80
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:PsaL
Chain IDs:O (auth: L)
Chain Length:157
Number of Molecules:1
Biological Source:Pisum sativum
Primary Citation
Structure of plant photosystem I-light harvesting complex I supercomplex at 2.4 angstrom resolution.
J Integr Plant Biol 63 1367 1381 (2021)
PMID: 33788400 DOI: 10.1111/jipb.13095

Abstact

Photosystem I (PSI) is one of the two photosystems in photosynthesis, and performs a series of electron transfer reactions leading to the reduction of ferredoxin. In higher plants, PSI is surrounded by four light-harvesting complex I (LHCI) subunits, which harvest and transfer energy efficiently to the PSI core. The crystal structure of PSI-LHCI supercomplex has been analyzed up to 2.6 Å resolution, providing much information on the arrangement of proteins and cofactors in this complicated supercomplex. Here we have optimized crystallization conditions, and analyzed the crystal structure of PSI-LHCI at 2.4 Å resolution. Our structure showed some shift of the LHCI, especially the Lhca4 subunit, away from the PSI core, suggesting the indirect connection and inefficiency of energy transfer from this Lhca subunit to the PSI core. We identified five new lipids in the structure, most of them are located in the gap region between the Lhca subunits and the PSI core. These lipid molecules may play important roles in binding of the Lhca subunits to the core, as well as in the assembly of the supercomplex. The present results thus provide novel information for the elucidation of the mechanisms for the light-energy harvesting, transfer and assembly of this supercomplex.

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