7DJT image
Deposition Date 2020-11-21
Release Date 2021-05-19
Last Version Date 2023-11-15
Entry Detail
PDB ID:
7DJT
Keywords:
Title:
Human SARM1 inhibitory state bounded with inhibitor dHNN
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD(+) hydrolase SARM1
Gene (Uniprot):SARM1
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:698
Number of Molecules:8
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
VI3 A CYS modified residue
Ligand Molecules
Primary Citation
Permeant fluorescent probes visualize the activation of SARM1 and uncover an anti-neurodegenerative drug candidate.
Elife 10 ? ? (2021)
PMID: 33944777 DOI: 10.7554/eLife.67381

Abstact

SARM1 regulates axonal degeneration through its NAD-metabolizing activity and is a drug target for neurodegenerative disorders. We designed and synthesized fluorescent conjugates of styryl derivative with pyridine to serve as substrates of SARM1, which exhibited large red shifts after conversion. With the conjugates, SARM1 activation was visualized in live cells following elevation of endogenous NMN or treatment with a cell-permeant NMN-analog. In neurons, imaging documented mouse SARM1 activation preceded vincristine-induced axonal degeneration by hours. Library screening identified a derivative of nisoldipine (NSDP) as a covalent inhibitor of SARM1 that reacted with the cysteines, especially Cys311 in its ARM domain and blocked its NMN-activation, protecting axons from degeneration. The Cryo-EM structure showed that SARM1 was locked into an inactive conformation by the inhibitor, uncovering a potential neuroprotective mechanism of dihydropyridines.

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Primary Citation of related structures