7DI3 image
Entry Detail
PDB ID:
7DI3
Keywords:
Title:
Cytochrome P450 (CYP105D18) W.T.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-11-18
Release Date:
2021-07-14
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome P450 hydroxylase
Chain IDs:A
Chain Length:396
Number of Molecules:1
Biological Source:Streptomyces laurentii
Ligand Molecules
Primary Citation
Characterization of high-H 2 O 2 -tolerant bacterial cytochrome P450 CYP105D18: insights into papaverine N-oxidation.
Iucrj 8 684 694 (2021)
PMID: 34258016 DOI: 10.1107/S2052252521005522

Abstact

The bacterial CYP105 family is involved in secondary metabolite biosynthetic pathways and plays essential roles in the biotransformation of xenobiotics. This study investigates the newly identified H2O2-mediated CYP105D18 from Streptomyces laurentii as the first bacterial CYP for N-oxidation. The catalytic efficiency of CYP105D18 for papaverine N-oxidation was 1.43 s-1 µM -1. The heme oxidation rate (k) was low (<0.3 min-1) in the presence of 200 mM H2O2. This high H2O2 tolerance capacity of CYP105D18 led to higher turnover prior to heme oxidation. Additionally, the high-resolution papaverine complexed structure and substrate-free structure of CYP105D18 were determined. Structural analysis and activity assay results revealed that CYP105D18 had a strong substrate preference for papaverine because of its bendable structure. These findings establish a basis for biotechnological applications of CYP105D18 in the pharmaceutical and medicinal industries.

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Primary Citation of related structures