7DHA image
Entry Detail
PDB ID:
7DHA
Keywords:
Title:
crystal structure of CD38 in complex with daratumumab
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-11-13
Release Date:
2021-09-22
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Mutations:N56D, N120A, N175D, N209D
Chain IDs:A
Chain Length:265
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Light chain
Chain IDs:B
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Heavy Chain
Chain IDs:C
Chain Length:234
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal structure of CD38 in complex with daratumumab, a first-in-class anti-CD38 antibody drug for treating multiple myeloma.
Biochem.Biophys.Res.Commun. 536 26 31 (2021)
PMID: 33360095 DOI: 10.1016/j.bbrc.2020.12.048

Abstact

Multiple myeloma is a blood cancer characterized by the plasma cell malignancy in the bone marrow, resulting in the destruction of bone tissue. Recently, the US FDA approved two antibody drugs for the treatment of multiple myeloma, daratumumab and isatuximab, targeting CD38, a type II transmembrane glycoprotein highly expressed in plasma cells and multiple myeloma cells. Here, we report the crystal structure of CD38 in complex with the Fab fragment of daratumumab, providing its exact epitope on CD38 and the structural insights into the mechanism of action of the antibody drug. Daratumumab binds to a specific discontinuous region on CD38 that includes residues located opposite to the active site of CD38. All the six complementarity determining regions of daratumumab are involved in the CD38 interaction. The epitopes of daratumumab and isatuximab do not overlap at all and their bindings to CD38 induce different structural changes within the CD38 protein. This structural study can facilitate the design of improved biologics or effective combination therapies for the treatment of multiple myeloma.

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