7DF1 image
Deposition Date 2020-11-06
Release Date 2022-12-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7DF1
Title:
Crystal structure of human CD98 heavy chain extracellular domain in complex with S1-F4 scFv
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.81 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:4F2 cell-surface antigen heavy chain
Gene (Uniprot):SLC3A2
Chain IDs:A, B, C, D
Chain Length:420
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S1-F4 VH
Chain IDs:E (auth: H), G (auth: E), I (auth: F), K (auth: G)
Chain Length:140
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:IGL c2062_light_IGKV4-1_IGKJ5
Chain IDs:F (auth: L), H (auth: I), J, L (auth: K)
Chain Length:122
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An anti-CD98 antibody displaying pH-dependent Fc-mediated tumour-specific activity against multiple cancers in CD98-humanized mice.
Nat Biomed Eng ? ? ? (2022)
PMID: 36424464 DOI: 10.1038/s41551-022-00956-5

Abstact

The cell-surface glycoprotein CD98-a subunit of the LAT1/CD98 amino acid transporter-is an attractive target for cancer immunotherapies, but its widespread expression has hampered the development of CD98-targeting antibody therapeutics. Here we report that an anti-CD98 antibody, identified via the screening of phage-display libraries of CD98 single-chain variable fragments with mutated complementarity-determining regions, preserves the physiological function of CD98 and elicits broad-spectrum crystallizable-fragment (Fc)-mediated anti-tumour activity (requiring Fcγ receptors for immunoglobulins, macrophages, dendritic cells and CD8+ T cells, as well as other components of the innate and adaptive immune systems) in multiple xenograft and syngeneic tumour models established in CD98-humanized mice. We also show that a variant of the anti-CD98 antibody with pH-dependent binding, generated by solving the structure of the antibody-CD98 complex, displayed enhanced tumour-specific activity and pharmacokinetics. pH-dependent antibody variants targeting widely expressed antigens may lead to superior therapeutic outcomes.

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Primary Citation of related structures