7DDT image
Deposition Date 2020-10-29
Release Date 2021-09-08
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7DDT
Keywords:
Title:
Ancestral myoglobin aMbSe of Enaliarctos relative (imidazol ligand)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ancestral myoglobin aMbSe
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.
Iscience 24 102920 102920 (2021)
PMID: 34430810 DOI: 10.1016/j.isci.2021.102920

Abstact

Myoglobin (Mb) is highly concentrated in the myocytes of diving mammals such as whales and seals, in comparison with land animals, and its molecular evolution has played a crucial role in their deep-sea adaptation. We previously resurrected ancestral whale Mbs and demonstrated the evolutional strategies for higher solubility under macromolecular crowding conditions. Pinnipeds, such as seals and sea lions, are also expert diving mammals with Mb-rich muscles. In the present study, we resurrected ancestral pinniped Mbs and investigated their biochemical and structural properties. Comparisons between pinniped and whale Mbs revealed the common and distinctive strategies for the deep-sea adaptation. The overall evolution processes, gaining precipitant tolerance and improving thermodynamic stability, were commonly observed. However, the strategies for improving the folding stability differed, and the pinniped Mbs exploited the shielding of hydrophobic surfaces more effectively than the whale Mbs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures