7DDQ image
Deposition Date 2020-10-29
Release Date 2021-06-30
Last Version Date 2025-06-25
Entry Detail
PDB ID:
7DDQ
Keywords:
Title:
Structure of RC-LH1-PufX from Rhodobacter veldkampii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.84 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center subunit H
Gene (Uniprot):puhA
Chain IDs:DA (auth: H)
Chain Length:252
Number of Molecules:1
Biological Source:Rhodobacter veldkampii DSM 11550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center L subunit
Gene (Uniprot):C5F46_07915
Chain IDs:BA (auth: L)
Chain Length:276
Number of Molecules:1
Biological Source:Rhodobacter veldkampii DSM 11550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):C5F46_07920
Chain IDs:CA (auth: M)
Chain Length:308
Number of Molecules:1
Biological Source:Rhodobacter veldkampii DSM 11550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein beta chain
Gene (Uniprot):C5F46_07905
Chain IDs:B (auth: N), D (auth: S), F (auth: O), H (auth: U), J (auth: D), L (auth: A), N (auth: J), P (auth: E), R (auth: T), U (auth: R), W (auth: K), Y (auth: G), AA (auth: I), FA (auth: F), HA (auth: B)
Chain Length:48
Number of Molecules:15
Biological Source:Rhodobacter veldkampii DSM 11550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PufX
Gene (Uniprot):C5F46_07925
Chain IDs:S (auth: X)
Chain Length:83
Number of Molecules:1
Biological Source:Rhodobacter veldkampii DSM 11550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein alpha chain
Gene (Uniprot):C5F46_07910
Chain IDs:A (auth: o), C (auth: t), E (auth: r), G (auth: a), I (auth: e), K (auth: b), M (auth: k), O (auth: f), Q (auth: u), T (auth: s), V (auth: n), X (auth: i), Z (auth: j), EA (auth: g), GA (auth: d)
Chain Length:48
Number of Molecules:15
Biological Source:Rhodobacter veldkampii DSM 11550
Primary Citation
Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-angstrom resolution.
Sci Adv 7 ? ? (2021)
PMID: 34134992 DOI: 10.1126/sciadv.abf8864

Abstact

The reaction center (RC)-light-harvesting complex 1 (LH1) supercomplex plays a pivotal role in bacterial photosynthesis. Many RC-LH1 complexes integrate an additional protein PufX that is key for bacterial growth and photosynthetic competence. Here, we present a cryo-electron microscopy structure of the RC-LH1-PufX supercomplex from Rhodobacter veldkampii at 2.8-Å resolution. The RC-LH1-PufX monomer contains an LH ring of 15 αβ-polypeptides with a 30-Å gap formed by PufX. PufX acts as a molecular "cross brace" to reinforce the RC-LH1 structure. The unusual PufX-mediated large opening in the LH1 ring and defined arrangement of proteins and cofactors provide the molecular basis for the assembly of a robust RC-LH1-PufX supercomplex and efficient quinone transport and electron transfer. These architectural features represent the natural strategies for anoxygenic photosynthesis and environmental adaptation.

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