7D5Q image
Entry Detail
PDB ID:
7D5Q
Title:
Structure of NorC transporter (K398A mutant) in an outward-open conformation in complex with a single-chain Indian camelid antibody
Biological Source:
PDB Version:
Deposition Date:
2020-09-27
Release Date:
2021-06-09
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.31
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Drug transporter, putative
Mutations:K398A
Chain IDs:A, B
Chain Length:479
Number of Molecules:2
Biological Source:Staphylococcus aureus subsp. aureus COL
Polymer Type:polypeptide(L)
Description:ICab
Chain IDs:C, D
Chain Length:131
Number of Molecules:2
Biological Source:Camelus dromedarius
Ligand Molecules
Primary Citation
Structural basis of inhibition of a transporter from Staphylococcus aureus, NorC, through a single-domain camelid antibody.
Commun Biol 4 836 836 (2021)
PMID: 34226658 DOI: 10.1038/s42003-021-02357-x

Abstact

Transporters play vital roles in acquiring antimicrobial resistance among pathogenic bacteria. In this study, we report the X-ray structure of NorC, a 14-transmembrane major facilitator superfamily member that is implicated in fluoroquinolone resistance in drug-resistant Staphylococcus aureus strains, at a resolution of 3.6 Å. The NorC structure was determined in complex with a single-domain camelid antibody that interacts at the extracellular face of the transporter and stabilizes it in an outward-open conformation. The complementarity determining regions of the antibody enter and block solvent access to the interior of the vestibule, thereby inhibiting alternating-access. NorC specifically interacts with an organic cation, tetraphenylphosphonium, although it does not demonstrate an ability to transport it. The interaction is compromised in the presence of NorC-antibody complex, consequently establishing a strategy to detect and block NorC and related transporters through the use of single-domain camelid antibodies.

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