7D55 image
Deposition Date 2020-09-25
Release Date 2021-06-09
Last Version Date 2024-03-27
Entry Detail
PDB ID:
7D55
Keywords:
Title:
Crystal structure of lys170 CBD
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative N-acetylmuramoyl-L-alanine amidase
Gene (Uniprot):PHIM1EF22_0110
Chain IDs:A, B, C, D
Chain Length:88
Number of Molecules:4
Biological Source:Enterococcus phage phiM1EF22
Primary Citation
Structural and biochemical analyses of the tetrameric cell binding domain of Lys170 from enterococcal phage F170/08.
Eur.Biophys.J. 50 721 729 (2021)
PMID: 33609147 DOI: 10.1007/s00249-021-01511-x

Abstact

Lysins are a class of hydrolytic enzymes used by bacteriophages to target and cleave the peptidoglycan of bacterial cell walls during their lytic cycle. The lysins from bacteriophages that infect Gram-positive bacteria are typically monomeric and consist of one or two catalytic domains (CD) and a cell binding domain (CBD). However, multimeric lysins encoded by a single gene have also been reported, among which Lys170 from enterococcal phage F170/08 was one of the first identified. Here, we determined the crystal structure of Lys170 CBD at 1.40 Å resolution. The structure reveals that Lys170 CBDs assemble into a tetrameric functional unit and that each monomer folds into a three-stranded β-sheet core capped on each side by an α-helix. In addition, we identified key residues of Lys170 CBD involved in host cell binding. Our work provides a basis for designing highly efficient lysins targeting Enterococcus faecalis.

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Primary Citation of related structures
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