7D0J image
Deposition Date 2020-09-10
Release Date 2021-03-03
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7D0J
Keywords:
Title:
Photosystem I-LHCI-LHCII of Chlamydomonas reinhardtii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.42 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:T (auth: 1), CA (auth: a)
Chain Length:194
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):CHLRE_12g508750v5
Chain IDs:U (auth: 2)
Chain Length:201
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:V (auth: 3)
Chain Length:203
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-1
Chain IDs:W (auth: 4)
Chain Length:205
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-3
Chain IDs:X (auth: 5)
Chain Length:225
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-5
Chain IDs:Y (auth: 6)
Chain Length:230
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-7
Chain IDs:Z (auth: 7)
Chain Length:213
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcI-4
Chain IDs:AA (auth: 8)
Chain Length:217
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:BA (auth: 9)
Chain Length:182
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A
Chain Length:194
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B
Chain Length:734
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C
Chain Length:80
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II, chloroplastic
Gene (Uniprot):psaD
Chain IDs:D
Chain Length:144
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV, chloroplastic
Gene (Uniprot):PSAE
Chain IDs:E
Chain Length:63
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit F, Photosystem I reaction center subunit III, chloroplastic
Gene (Uniprot):PSAF
Chain IDs:F
Chain Length:165
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit V, chloroplastic
Gene (Uniprot):PSAG
Chain IDs:G
Chain Length:91
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VI, chloroplastic
Gene (Uniprot):PSAH
Chain IDs:H
Chain Length:100
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):CHLRE_03g165100v5
Chain IDs:I
Chain Length:37
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J
Chain Length:41
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit psaK, chloroplastic
Gene (Uniprot):PSAK
Chain IDs:K
Chain Length:85
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):CHLRE_12g486300v5
Chain IDs:L
Chain Length:159
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Photosystem I subunit O
Gene (Uniprot):CHLRE_07g334550v5
Chain IDs:M (auth: O)
Chain Length:93
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-1.3
Chain IDs:N (auth: P), O (auth: Q), P (auth: R), R (auth: T), S (auth: U)
Chain Length:219
Number of Molecules:5
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):CHLRE_06g283950v5
Chain IDs:Q (auth: S)
Chain Length:234
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO Q THR modified residue
Primary Citation
Structure of photosystem I-LHCI-LHCII from the green alga Chlamydomonas reinhardtii in State 2.
Nat Commun 12 1100 1100 (2021)
PMID: 33597543 DOI: 10.1038/s41467-021-21362-6

Abstact

Photosystem I (PSI) and II (PSII) balance their light energy distribution absorbed by their light-harvesting complexes (LHCs) through state transition to maintain the maximum photosynthetic performance and to avoid photodamage. In state 2, a part of LHCII moves to PSI, forming a PSI-LHCI-LHCII supercomplex. The green alga Chlamydomonas reinhardtii exhibits state transition to a far larger extent than higher plants. Here we report the cryo-electron microscopy structure of a PSI-LHCI-LHCII supercomplex in state 2 from C. reinhardtii at 3.42 Å resolution. The result reveals that the PSI-LHCI-LHCII of C. reinhardtii binds two LHCII trimers in addition to ten LHCI subunits. The PSI core subunits PsaO and PsaH, which were missed or not well-resolved in previous Cr-PSI-LHCI structures, are observed. The present results reveal the organization and assembly of PSI core subunits, LHCI and LHCII, pigment arrangement, and possible pathways of energy transfer from peripheral antennae to the PSI core.

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Primary Citation of related structures