7CTH image
Entry Detail
PDB ID:
7CTH
EMDB ID:
Keywords:
Title:
Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-08-19
Release Date:
2021-12-01
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Core protein
Chain IDs:A, B, C
Chain Length:495
Number of Molecules:3
Biological Source:Dengue virus 2
Polymer Type:polypeptide(L)
Description:Core protein
Chain IDs:D (auth: F), E (auth: D), F (auth: E)
Chain Length:75
Number of Molecules:3
Biological Source:Dengue virus 2
Polymer Type:polypeptide(L)
Description:Single Chain Variable Fragment
Chain IDs:G (auth: I), I (auth: H)
Chain Length:144
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Single Chain Variable Fragment
Chain IDs:H (auth: M), J (auth: L)
Chain Length:154
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

The human monoclonal antibody C10 exhibits extraordinary cross-reactivity, potently neutralizing Zika virus (ZIKV) and the four serotypes of dengue virus (DENV1-DENV4). Here we describe a comparative structure-function analysis of C10 bound to the envelope (E) protein dimers of the five viruses it neutralizes. We demonstrate that the C10 Fab has high affinity for ZIKV and DENV1 but not for DENV2, DENV3, and DENV4. We further show that the C10 interaction with the latter viruses requires an E protein conformational landscape that limits binding to only one of the three independent epitopes per virion. This limited affinity is nevertheless counterbalanced by the particle's icosahedral organization, which allows two different dimers to be reached by both Fab arms of a C10 immunoglobulin. The epitopes' geometric distribution thus confers C10 its exceptional neutralization breadth. Our results highlight the importance not only of paratope/epitope complementarity but also the topological distribution for epitope-focused vaccine design.

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Primary Citation of related structures