7CS8 image
Deposition Date 2020-08-14
Release Date 2021-06-09
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7CS8
Keywords:
Title:
IiPLR1 with NADP+ and (-)secoisolariciresinol
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.34
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pinoresinol-lariciresinol reductase
Chain IDs:A, B, C, D, E, F
Chain Length:317
Number of Molecules:6
Biological Source:Isatis tinctoria
Primary Citation
Structure-based engineering of substrate specificity for pinoresinol-lariciresinol reductases.
Nat Commun 12 2828 2828 (2021)
PMID: 33990581 DOI: 10.1038/s41467-021-23095-y

Abstact

Pinoresinol-lariciresinol reductases (PLRs) are enzymes involved in the lignan biosynthesis after the initial dimerization of two monolignols, and this represents the entry point for the synthesis of 8-8' lignans and contributes greatly to their structural diversity. Of particular interest has been the determination of how differing substrate specificities are achieved with these enzymes. Here, we present crystal structures of IiPLR1 from Isatis indigotica and pinoresinol reductases (PrRs) AtPrR1 and AtPrR2 from Arabidopsis thaliana, in the apo, substrate-bound and product-bound states. Each structure contains a head-to-tail homodimer, and the catalytic pocket comprises structural elements from both monomers. β4 loop covers the top of the pocket, and residue 98 from the loop governs catalytic specificity. The substrate specificities of IiPLR1 and AtPrR2 can be switched via structure-guided mutagenesis. Our study provides insight into the molecular mechanism underlying the substrate specificity of PLRs/PrRs and suggests an efficient strategy for the large-scale commercial production of the pharmaceutically valuable compound lariciresinol.

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