7CR5 image
Entry Detail
PDB ID:
7CR5
Title:
Complex structure of a human monoclonal antibody with SARS-CoV-2 nucleocapsid protein NTD
Biological Source:
PDB Version:
Deposition Date:
2020-08-12
Release Date:
2021-03-24
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nucleoprotein
Chain IDs:A
Chain Length:134
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:monoclonal antibody chain H
Chain IDs:B (auth: H)
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:monoclonal antibody chain L
Chain IDs:C (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A SARS-CoV-2 antibody curbs viral nucleocapsid protein-induced complement hyperactivation.
Nat Commun 12 2697 2697 (2021)
PMID: 33976229 DOI: 10.1038/s41467-021-23036-9

Abstact

Although human antibodies elicited by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) nucleocapsid (N) protein are profoundly boosted upon infection, little is known about the function of N-reactive antibodies. Herein, we isolate and profile a panel of 32 N protein-specific monoclonal antibodies (mAbs) from a quick recovery coronavirus disease-19 (COVID-19) convalescent patient who has dominant antibody responses to the SARS-CoV-2 N protein rather than to the SARS-CoV-2 spike (S) protein. The complex structure of the N protein RNA binding domain with the highest binding affinity mAb (nCoV396) reveals changes in the epitopes and antigen's allosteric regulation. Functionally, a virus-free complement hyperactivation analysis demonstrates that nCoV396 specifically compromises the N protein-induced complement hyperactivation, which is a risk factor for the morbidity and mortality of COVID-19 patients, thus laying the foundation for the identification of functional anti-N protein mAbs.

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Primary Citation of related structures