7COE image
Deposition Date 2020-08-04
Release Date 2021-08-04
Last Version Date 2025-09-17
Entry Detail
PDB ID:
7COE
Keywords:
Title:
Crystal structure of Receptor binding domain of MERS-CoV and KNIH90-F1 Fab complex
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.22
R-Value Work:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Chain IDs:C (auth: A), F (auth: D)
Chain Length:223
Number of Molecules:2
Biological Source:Middle East respiratory syndrome-related coronavirus
Polymer Type:polypeptide(L)
Molecule:Heavy chain
Chain IDs:A (auth: H), D (auth: B)
Chain Length:237
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain
Chain IDs:B (auth: L), E (auth: C)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The structure of a novel antibody against the spike protein inhibits Middle East respiratory syndrome coronavirus infections.
Sci Rep 12 1260 1260 (2022)
PMID: 35075213 DOI: 10.1038/s41598-022-05318-4

Abstact

Middle East respiratory syndrome coronavirus (MERS-CoV) is a zoonotic virus, responsible for outbreaks of a severe respiratory illness in humans with a fatality rate of 30%. Currently, there are no vaccines or United States food and drug administration (FDA)-approved therapeutics for humans. The spike protein displayed on the surface of MERS-CoV functions in the attachment and fusion of virions to host cellular membranes and is the target of the host antibody response. Here, we provide a molecular method for neutralizing MERS-CoV through potent antibody-mediated targeting of the receptor-binding subdomain (RBD) of the spike protein. The structural characterization of the neutralizing antibody (KNIH90-F1) complexed with RBD using X-ray crystallography revealed three critical epitopes (D509, R511, and E513) in the RBD region of the spike protein. Further investigation of MERS-CoV mutants that escaped neutralization by the antibody supported the identification of these epitopes in the RBD region. The neutralizing activity of this antibody is solely provided by these specific molecular structures. This work should contribute to the development of vaccines or therapeutic antibodies for MERS-CoV.

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Primary Citation of related structures