7CN2 image
Deposition Date 2020-07-29
Release Date 2020-09-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7CN2
Title:
Subparticle refinement of human papillomavirus type 16 pesudovirus in complex with H16.001 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.43 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein L1
Gene (Uniprot):L1
Chain IDs:M (auth: A), N (auth: B), O (auth: C), P (auth: D), Q (auth: E), R (auth: F)
Chain Length:505
Number of Molecules:6
Biological Source:Human papillomavirus type 16
Polymer Type:polypeptide(L)
Molecule:The heavy chain variable region of H16.001 Fab fragment
Chain IDs:B (auth: G), D (auth: I), F (auth: J), H (auth: K), J (auth: M), L (auth: H)
Chain Length:120
Number of Molecules:6
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:The light chain variable region of H16.001 Fab fragment
Chain IDs:A (auth: g), C (auth: i), E (auth: j), G (auth: k), I (auth: m), K (auth: L)
Chain Length:120
Number of Molecules:6
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Structural characterization of a neutralizing mAb H16.001, a potent candidate for a common potency assay for various HPV16 VLPs.
Npj Vaccines 5 89 89 (2020)
PMID: 33042588 DOI: 10.1038/s41541-020-00236-w

Abstact

With more human papillomavirus (HPV) virus-like particle (VLP) vaccines to hit the market in future, a monoclonal antibody (mAb) with preferably comparable reactivity against vaccines from different expression systems and bioprocesses is urgently needed for the potency characterization. Among all mAbs against HPV16 collected, rabbit mAb H16.001 is potently neutralizing with the highest affinity, recognizes an immune-dominant epitope, and can comparably react with HPV16 vaccines from various sources. Cryo-electron microscopic (cryo-EM) structure demonstrated that 360 H16.001 Fabs could bind to HPV16 capsid in preferable binding manner without steric hindrance between neighboring Fabs, potentially supporting its identification for VLP structural integrity and utility in monitoring VLP structural probity. This structural analysis indicated that mAb H16.001 afforded unbiased potency characterization for various HPV16 vaccines and was potential for use in vaccine regulation practice. This study also showed a model process for selecting suitable mAbs for potency assays of other vaccines.

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Protein

Chemical

Disease

Primary Citation of related structures
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