7CMG image
Deposition Date 2020-07-27
Release Date 2020-09-02
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7CMG
Title:
The Structure of the periplasmic domain of PorM
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Por secretion system protein porM/gldM
Gene (Uniprot):porM
Chain IDs:A, B
Chain Length:533
Number of Molecules:2
Biological Source:Porphyromonas gingivalis ATCC 33277
Ligand Molecules
Primary Citation
PorM, a core component of bacterial type IX secretion system, forms a dimer with a unique kinked-rod shape.
Biochem.Biophys.Res.Commun. 532 114 119 (2020)
PMID: 32828535 DOI: 10.1016/j.bbrc.2020.08.018

Abstact

Porphyromonas gingivalis, which is a major pathogen of the periodontal disease, secrets virulence factors such as gingipain proteases via the type IX secretion system (T9SS). T9SS consists of a trans-periplasmic core complex, the outer membrane translocon complex and the cell-surface complex attached on the outer membrane. PorM is a major component of the trans-periplasmic core complex and is believed to connect the outer membrane component with the inner membrane component. Recent structural studies have revealed that the periplasmic region of GldM, a PorM homolog of a gliding bacterium, consist of four domains and forms a dimer with a straight rod shape. However, only fragment structures are known for PorM. Moreover, one of the PorM fragment structure shows a kink. Here we show the structure of the entire structure of the periplasmic region of PorM (PorMp) at 3.7 Å resolution. PorMp is made up of four domains and forms a unique dimeric structure with an asymmetric, kinked-rod shape. The structure and the following mutational analysis revealed that R204 stabilizes the kink between the D1 and D2 domains and is essential for gingipains secretion, suggesting that the kinked structure of PorM is important for the functional T9SS formation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures