7CKC image
Entry Detail
PDB ID:
7CKC
EMDB ID:
Title:
Simplified Alpha-Carboxysome, T=4
Biological Source:
PDB Version:
Deposition Date:
2020-07-16
Release Date:
2021-08-25
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Unidentified carboxysome polypeptide
Chain IDs:A (auth: AA), E (auth: AB), I (auth: AC), M (auth: AD), Q (auth: AE), U (auth: AF), Y (auth: AG), CA (auth: AH), GA (auth: AI), KA (auth: AJ), OA (auth: AK), SA (auth: AL), WA (auth: AM), AB (auth: AN), EB (auth: AO), IB (auth: AP), MB (auth: AQ), QB (auth: AR), UB (auth: AS), YB (auth: AT), CC (auth: AV), GC (auth: AW), KC (auth: AX), OC (auth: AY), SC (auth: AZ), WC (auth: Aa), AD (auth: Ab), ED (auth: Ac), ID (auth: Ad), MD (auth: Ae), QD (auth: Af), UD (auth: Ag), YD (auth: Ah), CE (auth: Ai), GE (auth: Aj), KE (auth: Ak), OE (auth: Al), SE (auth: Am), WE (auth: An), AF (auth: Ao), EF (auth: Ap), IF (auth: Aq), MF (auth: Ar), QF (auth: As), UF (auth: At), YF (auth: Av), CG (auth: Aw), GG (auth: Ax), KG (auth: Ay), OG (auth: Az), SG (auth: A0), WG (auth: A1), AH (auth: A2), EH (auth: A3), IH (auth: A4), MH (auth: A5), QH (auth: A6), UH (auth: A7), YH (auth: A8), CI (auth: A9)
Chain Length:94
Number of Molecules:60
Biological Source:Halothiobacillus neapolitanus
Polymer Type:polypeptide(L)
Description:Major carboxysome shell protein 1A
Chain IDs:B (auth: BA), C (auth: CA), D (auth: DA), F (auth: BB), G (auth: CB), H (auth: DB), J (auth: BC), K (auth: CC), L (auth: DC), N (auth: BD), O (auth: CD), P (auth: DD), R (auth: BE), S (auth: CE), T (auth: DE), V (auth: BF), W (auth: CF), X (auth: DF), Z (auth: BG), AA (auth: CG), BA (auth: DG), DA (auth: BH), EA (auth: CH), FA (auth: DH), HA (auth: BI), IA (auth: CI), JA (auth: DI), LA (auth: BJ), MA (auth: CJ), NA (auth: DJ), PA (auth: BK), QA (auth: CK), RA (auth: DK), TA (auth: BL), UA (auth: CL), VA (auth: DL), XA (auth: BM), YA (auth: CM), ZA (auth: DM), BB (auth: BN), CB (auth: CN), DB (auth: DN), FB (auth: BO), GB (auth: CO), HB (auth: DO), JB (auth: BP), KB (auth: CP), LB (auth: DP), NB (auth: BQ), OB (auth: CQ), PB (auth: DQ), RB (auth: BR), SB (auth: CR), TB (auth: DR), VB (auth: BS), WB (auth: CS), XB (auth: DS), ZB (auth: BT), AC (auth: CT), BC (auth: DT), DC (auth: BV), EC (auth: CV), FC (auth: DV), HC (auth: BW), IC (auth: CW), JC (auth: DW), LC (auth: BX), MC (auth: CX), NC (auth: DX), PC (auth: BY), QC (auth: CY), RC (auth: DY), TC (auth: BZ), UC (auth: CZ), VC (auth: DZ), XC (auth: Ba), YC (auth: Ca), ZC (auth: Da), BD (auth: Bb), CD (auth: Cb), DD (auth: Db), FD (auth: Bc), GD (auth: Cc), HD (auth: Dc), JD (auth: Bd), KD (auth: Cd), LD (auth: Dd), ND (auth: Be), OD (auth: Ce), PD (auth: De), RD (auth: Bf), SD (auth: Cf), TD (auth: Df), VD (auth: Bg), WD (auth: Cg), XD (auth: Dg), ZD (auth: Bh), AE (auth: Ch), BE (auth: Dh), DE (auth: Bi), EE (auth: Ci), FE (auth: Di), HE (auth: Bj), IE (auth: Cj), JE (auth: Dj), LE (auth: Bk), ME (auth: Ck), NE (auth: Dk), PE (auth: Bl), QE (auth: Cl), RE (auth: Dl), TE (auth: Bm), UE (auth: Cm), VE (auth: Dm), XE (auth: Bn), YE (auth: Cn), ZE (auth: Dn), BF (auth: Bo), CF (auth: Co), DF (auth: Do), FF (auth: Bp), GF (auth: Cp), HF (auth: Dp), JF (auth: Bq), KF (auth: Cq), LF (auth: Dq), NF (auth: Br), OF (auth: Cr), PF (auth: Dr), RF (auth: Bs), SF (auth: Cs), TF (auth: Ds), VF (auth: Bt), WF (auth: Ct), XF (auth: Dt), ZF (auth: Bv), AG (auth: Cv), BG (auth: Dv), DG (auth: Bw), EG (auth: Cw), FG (auth: Dw), HG (auth: Bx), IG (auth: Cx), JG (auth: Dx), LG (auth: By), MG (auth: Cy), NG (auth: Dy), PG (auth: Bz), QG (auth: Cz), RG (auth: Dz), TG (auth: B0), UG (auth: C0), VG (auth: D0), XG (auth: B1), YG (auth: C1), ZG (auth: D1), BH (auth: B2), CH (auth: C2), DH (auth: D2), FH (auth: B3), GH (auth: C3), HH (auth: D3), JH (auth: B4), KH (auth: C4), LH (auth: D4), NH (auth: B5), OH (auth: C5), PH (auth: D5), RH (auth: B6), SH (auth: C6), TH (auth: D6), VH (auth: B7), WH (auth: C7), XH (auth: D7), ZH (auth: B8), AI (auth: C8), BI (auth: D8), DI (auth: B9), EI (auth: C9), FI (auth: D9)
Chain Length:98
Number of Molecules:180
Biological Source:Halothiobacillus neapolitanus (strain ATCC 23641 / c2)
Ligand Molecules
Primary Citation
Structure of a Minimal alpha-Carboxysome-Derived Shell and Its Utility in Enzyme Stabilization.
Biomacromolecules 22 4095 4109 (2021)
PMID: 34384019 DOI: 10.1021/acs.biomac.1c00533

Abstact

Bacterial microcompartments are proteinaceous shells that encase specialized metabolic processes in bacteria. Recent advances in simplification of these intricate shells have encouraged bioengineering efforts. Here, we construct minimal shells derived from the Halothiobacillus neapolitanus α-carboxysome, which we term Cso-shell. Using cryogenic electron microscopy, the atomic-level structures of two shell forms were obtained, reinforcing notions of evolutionarily conserved features in bacterial microcompartment shell architecture. Encapsulation peptide sequences that facilitate loading of heterologous protein cargo within the shells were identified. We further provide a first demonstration in utilizing minimal bacterial microcompartment-derived shells for hosting heterologous enzymes. Cso-shells were found to stabilize enzymatic activities against heat shock, presence of methanol co-solvent, consecutive freeze-thawing, and alkaline environments. This study yields insights into α-carboxysome assembly and advances the utility of synthetic bacterial microcompartments as nanoreactors capable of stabilizing enzymes with varied properties and reaction chemistries.

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Primary Citation of related structures