7CJS image
Entry Detail
PDB ID:
7CJS
Title:
structure of aquaporin
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-07-13
Release Date:
2021-11-03
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Aquaporin NIP2-1
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:254
Number of Molecules:8
Biological Source:Oryza sativa subsp. japonica
Primary Citation
Structural basis for high selectivity of a rice silicon channel Lsi1.
Nat Commun 12 6236 6236 (2021)
PMID: 34716344 DOI: 10.1038/s41467-021-26535-x

Abstact

Silicon (Si), the most abundant mineral element in the earth's crust, is taken up by plant roots in the form of silicic acid through Low silicon rice 1 (Lsi1). Lsi1 belongs to the Nodulin 26-like intrinsic protein subfamily in aquaporin and shows high selectivity for silicic acid. To uncover the structural basis for this high selectivity, here we show the crystal structure of the rice Lsi1 at a resolution of 1.8 Å. The structure reveals transmembrane helical orientations different from other aquaporins, characterized by a unique, widely opened, and hydrophilic selectivity filter (SF) composed of five residues. Our structural, functional, and theoretical investigations provide a solid structural basis for the Si uptake mechanism in plants, which will contribute to secure and sustainable rice production by manipulating Lsi1 selectivity for different metalloids.

Legend

Protein

Chemical

Disease

Primary Citation of related structures