7CGI image
Deposition Date 2020-07-01
Release Date 2021-07-07
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7CGI
Title:
Crystal Structure of PUF-8 in Complex with PBE-RNA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PUM-HD domain-containing protein
Gene (Uniprot):puf-8
Chain IDs:A
Chain Length:360
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Polymer Type:polyribonucleotide
Molecule:PBE-5U (5'-R(P*UP*GP*UP*AP*UP*AP*UP*A)-3')
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Ligand Molecules
Primary Citation
Structural recognition of the mRNA 3' UTR by PUF-8 restricts the lifespan of C. elegans.
Nucleic Acids Res. 49 10082 10097 (2021)
PMID: 34478557 DOI: 10.1093/nar/gkab754

Abstact

The molecular mechanisms of aging are unsolved fundamental biological questions. Caenorhabditis elegans is an ideal model organism for investigating aging. PUF-8, a PUF (Pumilio and FBF) protein in C. elegans, is crucial for germline development through binding with the 3' untranslated regions (3' UTR) in the target mRNAs. Recently, PUF-8 was reported to alter mitochondrial dynamics and mitophagy by regulating MFF-1, a mitochondrial fission factor, and subsequently regulated longevity. Here, we determined the crystal structure of the PUF domain of PUF-8 with an RNA substrate. Mutagenesis experiments were performed to alter PUF-8 recognition of its target mRNAs. Those mutations reduced the fertility and extended the lifespan of C. elegans. Deep sequencing of total mRNAs from wild-type and puf-8 mutant worms as well as in vivo RNA Crosslinking and Immunoprecipitation (CLIP) experiments identified six PUF-8 regulated genes, which contain at least one PUF-binding element (PBE) at the 3' UTR. One of the six genes, pqm-1, is crucial for lipid storage and aging process. Knockdown of pqm-1 could revert the lifespan extension of puf-8 mutant animals. We conclude that PUF-8 regulate the lifespan of C. elegans may not only via MFF but also via modulating pqm-1-related pathways.

Legend

Protein

Chemical

Disease

Primary Citation of related structures