7C9R image
Deposition Date 2020-06-07
Release Date 2020-10-07
Last Version Date 2025-04-09
Entry Detail
PDB ID:
7C9R
Keywords:
Title:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF THIORHODOVIBRIO STRAIN 970
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.82 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha subunit 2 of light-harvesting 1 complex
Gene (Uniprot):pufA2
Chain IDs:IA (auth: 9)
Chain Length:86
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Alpha subunit 1 of light-harvesting 1 complex
Gene (Uniprot):pufA1
Chain IDs:E (auth: A), G (auth: D), I (auth: F), K (auth: I), M (auth: K), O
Chain Length:73
Number of Molecules:6
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Antenna complex alpha/beta subunit
Gene (Uniprot):pufB2
Chain IDs:F (auth: B), P, DA (auth: 4)
Chain Length:46
Number of Molecules:3
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):Thi970DRAFT_03674
Chain IDs:A (auth: C)
Chain Length:396
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Antenna complex alpha/beta subunit
Gene (Uniprot):pufB1
Chain IDs:H (auth: E), J (auth: G), L (auth: J), N, R, T, V, X, Z, BA (auth: 2), FA (auth: 6), HA (auth: 8), JA (auth: 0)
Chain Length:46
Number of Molecules:13
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center, subunit H, bacterial
Gene (Uniprot):Thi970DRAFT_01563
Chain IDs:D (auth: H)
Chain Length:258
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:L subunit of the reaction center
Gene (Uniprot):pufL
Chain IDs:B (auth: L)
Chain Length:273
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:C (auth: M)
Chain Length:324
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:Antenna complex alpha/beta subunit
Gene (Uniprot):Thi970DRAFT_03676
Chain IDs:Q
Chain Length:81
Number of Molecules:1
Biological Source:Thiorhodovibrio sp. 970
Polymer Type:polypeptide(L)
Molecule:LHC domain-containing protein
Gene (Uniprot):Thi970DRAFT_03671
Chain IDs:S, U, W, Y, AA (auth: 1), CA (auth: 3), EA (auth: 5), GA (auth: 7)
Chain Length:77
Number of Molecules:8
Biological Source:Thiorhodovibrio sp. 970
Primary Citation
Cryo-EM structure of a Ca 2+ -bound photosynthetic LH1-RC complex containing multiple alpha beta-polypeptides.
Nat Commun 11 4955 4955 (2020)
PMID: 33009385 DOI: 10.1038/s41467-020-18748-3

Abstact

The light-harvesting-reaction center complex (LH1-RC) from the purple phototrophic bacterium Thiorhodovibrio strain 970 exhibits an LH1 absorption maximum at 960 nm, the most red-shifted absorption for any bacteriochlorophyll (BChl) a-containing species. Here we present a cryo-EM structure of the strain 970 LH1-RC complex at 2.82 Å resolution. The LH1 forms a closed ring structure composed of sixteen pairs of the αβ-polypeptides. Sixteen Ca ions are present in the LH1 C-terminal domain and are coordinated by residues from the αβ-polypeptides that are hydrogen-bonded to BChl a. The Ca2+-facilitated hydrogen-bonding network forms the structural basis of the unusual LH1 redshift. The structure also revealed the arrangement of multiple forms of α- and β-polypeptides in an individual LH1 ring. Such organization indicates a mechanism of interplay between the expression and assembly of the LH1 complex that is regulated through interactions with the RC subunits inside.

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