7C8P image
Deposition Date 2020-06-03
Release Date 2021-04-14
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7C8P
Keywords:
Title:
Structural and functional characterization of human group A rotavirus P[25] VP8*
Biological Source:
Source Organism:
Rotavirus A (Taxon ID: 28875)
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP4
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Rotavirus A
Primary Citation
Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen.
Virology 555 56 63 (2021)
PMID: 33453651 DOI: 10.1016/j.virol.2020.12.016

Abstact

Rotavirus (RV) is a common cause of acute gastroenteritis in young children. While P[8] and P[4] are the most prevalent RV genotypes in humans, other genotypes are also reported in human infections occasionally, including human P[25]. The glycan binding and structural characteristics of human P[25] were explored in our study. Human P[25] VP8* recognized type A histo-blood group antigen (HBGA) in the glycan microarray/oligosaccharide binding assay and could specifically hemagglutinate type A blood cells. Moreover, the P[25] VP8* structure was determined at 2.6 Å, revealing a similar conformation and a conserved putative glycan binding site as that of P[14] VP8*. This study provided further knowledge of the glycan binding and structural features of P[25] RV VP8*, promoting our understanding of the infection, prevalence, and host range of the P[III] RVs.

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