7C33 image
Entry Detail
PDB ID:
7C33
Keywords:
Title:
Macro domain of SARS-CoV-2 in complex with ADP-ribose
Biological Source:
PDB Version:
Deposition Date:
2020-05-11
Release Date:
2020-11-11
Method Details:
Experimental Method:
Resolution:
3.83 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Non-structural protein 3
Chain IDs:A, B, C, D
Chain Length:175
Number of Molecules:4
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
Structural, Biophysical, and Biochemical Elucidation of the SARS-CoV-2 Nonstructural Protein 3 Macro Domain.
Acs Infect Dis. 6 2970 2978 (2020)
PMID: 32946224 DOI: 10.1021/acsinfecdis.0c00441

Abstact

The pandemic outbreak of a novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has threatened the global public health and economy since late December 2019. SARS-CoV-2 encodes the conserved macro domain within nonstructural protein 3, which may reverse cellular ADP-ribosylation and potentially cut the signal of a viral infection in the cell. Herein, we report that the SARS-CoV-2 macro domain was examined as a poly-ADP-ribose (ADPR) binding module and possessed mono-ADPR cleavage enzyme activity. After confirming the ADPR binding ability via a biophysical approach, the X-ray crystal structure of the SARS-CoV-2 macro domain was determined and structurally compared with those of other viruses. This study provides structural, biophysical, and biochemical bases to further evaluate the role of the SARS-CoV-2 macro domain in the host response via ADP-ribose binding but also as a potential target for drug design against COVID-19.

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