7C2T image
Deposition Date 2020-05-09
Release Date 2020-07-08
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7C2T
Keywords:
Title:
Helical reconstruction of Zika virus complexed with Fab C10
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Zika virus (Taxon ID: 64320)
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.40 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:envelope protein
Chain IDs:A (auth: B), E (auth: N)
Chain Length:504
Number of Molecules:2
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Molecule:M protein
Chain IDs:B (auth: E), F (auth: Q)
Chain Length:75
Number of Molecules:2
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Molecule:Heavy chain from Fab C10
Chain IDs:C (auth: K), G (auth: V)
Chain Length:127
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain from Fab C10
Chain IDs:D (auth: L), H (auth: W)
Chain Length:109
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
High flavivirus structural plasticity demonstrated by a non-spherical morphological variant.
Nat Commun 11 3112 3112 (2020)
PMID: 32561757 DOI: 10.1038/s41467-020-16925-y

Abstact

Previous flavivirus (dengue and Zika viruses) studies showed largely spherical particles either with smooth or bumpy surfaces. Here, we demonstrate flavivirus particles have high structural plasticity by the induction of a non-spherical morphology at elevated temperatures: the club-shaped particle (clubSP), which contains a cylindrical tail and a disc-like head. Complex formation of DENV and ZIKV with Fab C10 stabilize the viruses allowing cryoEM structural determination to ~10 Å resolution. The caterpillar-shaped (catSP) Fab C10:ZIKV complex shows Fabs locking the E protein raft structure containing three E dimers. However, compared to the original spherical structure, the rafts have rotated relative to each other. The helical tail structure of Fab C10:DENV3 clubSP showed although the Fab locked an E protein dimer, the dimers have shifted laterally. Morphological diversity, including clubSP and the previously identified bumpy and smooth-surfaced spherical particles, may help flavivirus survival and immune evasion.

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Primary Citation of related structures