7C1M image
Deposition Date 2020-05-05
Release Date 2020-09-02
Last Version Date 2024-05-15
Entry Detail
PDB ID:
7C1M
Keywords:
Title:
Complex structure of tyrosinated alpha-tubulin carboxy-terminal peptide and A1aY1 binder
Biological Source:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nanobody binder from SSO7d library
Chain IDs:A
Chain Length:67
Number of Molecules:1
Biological Source:Saccharolobus solfataricus 98/2
Polymer Type:polypeptide(L)
Molecule:Carboxy-terminal peptide from tyrosinated alpha-tubulin
Chain IDs:B
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Genetically encoded live-cell sensor for tyrosinated microtubules.
J.Cell Biol. 219 ? ? (2020)
PMID: 32886100 DOI: 10.1083/jcb.201912107

Abstact

Microtubule cytoskeleton exists in various biochemical forms in different cells due to tubulin posttranslational modifications (PTMs). Tubulin PTMs are known to affect microtubule stability, dynamics, and interaction with MAPs and motors in a specific manner, widely known as tubulin code hypothesis. At present, there exists no tool that can specifically mark tubulin PTMs in living cells, thus severely limiting our understanding of their dynamics and cellular functions. Using a yeast display library, we identified a binder against terminal tyrosine of α-tubulin, a unique PTM site. Extensive characterization validates the robustness and nonperturbing nature of our binder as tyrosination sensor, a live-cell tubulin nanobody specific towards tyrosinated microtubules. Using this sensor, we followed nocodazole-, colchicine-, and vincristine-induced depolymerization events of tyrosinated microtubules in real time and found each distinctly perturbs the microtubule polymer. Together, our work describes a novel tyrosination sensor and its potential applications to study the dynamics of microtubule and their PTM processes in living cells.

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Primary Citation of related structures