7C11 image
Deposition Date 2020-05-02
Release Date 2020-10-28
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7C11
Keywords:
Title:
Formate--tetrahydrofolate ligase from Methylobacterium extorquens CM4 strain
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.82 Å
R-Value Free:
0.27
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate-tetrahydrofolate ligase
Gene (Uniprot):fhs
Chain IDs:A, B, C, D, E (auth: M), F (auth: N), G (auth: O), H (auth: P)
Chain Length:568
Number of Molecules:8
Biological Source:Methylorubrum extorquens (strain CM4 / NCIMB 13688)
Primary Citation
Biochemical properties and crystal structure of formate-tetrahydrofolate ligase from Methylobacterium extorquens CM4.
Biochem.Biophys.Res.Commun. 528 426 431 (2020)
PMID: 32505353 DOI: 10.1016/j.bbrc.2020.05.198

Abstact

Methylobacterium extorquens is a methylotroph model organism that has the ability to assimilate formate using the tetrahydrofolate (THF) pathway. The formate-tetrahydrofolate ligase from M. extorquens (MeFtfL) is an enzyme involved in the THF pathway that catalyzes the conversion of formate, THF, and ATP into formyltetrahydrofolate and ADP. To investigate the biochemical properties of MeFtfL, we evaluated the metal usage and enzyme kinetics of the enzyme. MeFtfL uses the Mg ion for catalytic activity, but also has activity for Mn and Ca ions. The enzyme kinetics analysis revealed that Km value of farmate was much higher than THF and ATP, which shows that the ligation activity of MeFtfL is highly dependent on formation concentration. We also determined the crystal structure of MeFtfL at 2.8 Å resolution. MeFtfL functions as a tetramer, and each monomer consists of three domains. The structural superposition of MeFtfL with FtfL from Moorella thermoacetica allowed us to predict the substrate binding site of the enzyme.

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Primary Citation of related structures
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