7BYU image
Deposition Date 2020-04-24
Release Date 2020-05-27
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7BYU
Title:
Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.21 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:L-fucose mutarotase
Gene (Uniprot):Acav_1655
Chain IDs:A, B
Chain Length:120
Number of Molecules:2
Biological Source:Acidovorax avenae subsp. avenae ATCC 19860
Primary Citation
Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun. 528 21 27 (2020)
PMID: 32448506 DOI: 10.1016/j.bbrc.2020.05.094

Abstact

Mutarotases catalyze the α-β anomeric conversion of monosaccharide, and play a key role in utilizing sugar as enzymes involved in sugar metabolism have specificity for the α- or β-anomer. In spite of the sequential similarity to l-rhamnose mutarotase protein superfamily (COG3254: RhaM), the ACAV_RS08160 gene in Acidovorax avenae ATCC 19860 (AaFucM) is located in a gene cluster related to non-phosphorylative l-fucose and l-galactose metabolism, and transcriptionally induced by these carbon sources; therefore, the physiological role remains unclear. Here, we report that AaFucM possesses mutarotation activity only toward l-fucose by saturation difference (SD) NMR experiments. Moreover, we determined the crystal structures of AaFucM in the apo form and in the l-fucose-bound form at resolutions of 2.21 and 1.75 Å, respectively. The overall structural folding was clearly similar to the RhaM members, differed from the known l-fucose mutarotase (COG4154: FucU), strongly indicating their convergent evolution. The structure-based mutational analyses suggest that Tyr18 is important for catalytic action, and that Gln87 and Trp99 are involved in the l-fucose-specific recognition.

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