7BWK image
Entry Detail
PDB ID:
7BWK
Title:
Structure of DotL(656-783)-IcmS-IcmW-LvgA-VpdB(461-590) derived from Legionella pneumophila
Biological Source:
PDB Version:
Deposition Date:
2020-04-14
Release Date:
2020-06-03
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:IcmO (DotL)
Chain IDs:A, F
Chain Length:128
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polymer Type:polypeptide(L)
Description:IcmS
Chain IDs:B, G
Chain Length:114
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polymer Type:polypeptide(L)
Description:IcmW
Chain IDs:C, H
Chain Length:151
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polymer Type:polypeptide(L)
Description:Hypothetical virulence protein
Chain IDs:D, I
Chain Length:208
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polymer Type:polypeptide(L)
Description:PNPLA domain-containing protein
Chain IDs:E, J
Chain Length:130
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Ligand Molecules
Primary Citation
Structural basis for effector protein recognition by the Dot/Icm Type IVB coupling protein complex.
Nat Commun 11 2623 2623 (2020)
PMID: 32457311 DOI: 10.1038/s41467-020-16397-0

Abstact

The Legionella pneumophila Dot/Icm type IVB secretion system (T4BSS) is extremely versatile, translocating ~300 effector proteins into host cells. This specialized secretion system employs the Dot/Icm type IVB coupling protein (T4CP) complex, which includes IcmS, IcmW and LvgA, that are known to selectively assist the export of a subclass of effectors. Herein, the crystal structure of a four-subunit T4CP subcomplex bound to the effector protein VpdB reveals an interaction between LvgA and a linear motif in the C-terminus of VpdB. The same binding interface of LvgA also interacts with the C-terminal region of three additional effectors, SidH, SetA and PieA. Mutational analyses identified a FxxxLxxxK binding motif that is shared by VpdB and SidH, but not by SetA and PieA, showing that LvgA recognizes more than one type of binding motif. Together, this work provides a structural basis for how the Dot/Icm T4CP complex recognizes effectors, and highlights the multiple substrate-binding specificities of its adaptor subunit.

Legend

Protein

Chemical

Disease

Primary Citation of related structures