7BO6 image
Deposition Date 2021-01-24
Release Date 2021-08-11
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7BO6
Keywords:
Title:
VDR complex with LCA derivative
Biological Source:
Source Organism:
Danio rerio (Taxon ID: 7955)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vitamin D3 receptor A
Gene (Uniprot):vdra
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Danio rerio
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator 1
Gene (Uniprot):NCOA1
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Lithocholic acid-based design of noncalcemic vitamin D receptor agonists.
Bioorg.Chem. 111 104878 104878 (2021)
PMID: 33853023 DOI: 10.1016/j.bioorg.2021.104878

Abstact

The hypercalcemic effects of the hormone 1α,25-dihydroxyvitamin D3 (calcitriol) and most of known vitamin D metabolites and analogs call for the development of non secosteroidal vitamin D receptor (VDR) ligands as new selective and noncalcemic agonists for treatment of hyperproliferative diseases. We report on the in silico design and stereoselective synthesis of six lithocholic acid derivatives as well as on the calcemic activity of a potent LCA derivative and its crystallographic structure in complex with zVDR LBD. The low calcemic activity of this compound in comparison with the native hormone makes it of potential therapeutic value. Structure-function relationships provide the basis for the development of even more potent and selective lithocholic acid-based VDR ligands.

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Primary Citation of related structures
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