7BM5 image
Deposition Date 2021-01-19
Release Date 2021-06-02
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7BM5
Keywords:
Title:
Crystal structure of Fab1, the Fab fragment of the anti-BamA monoclonal antibody MAB1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab1 heavy chain
Chain IDs:B (auth: H), H (auth: B), I (auth: D), J (auth: F), K, L (auth: I)
Chain Length:228
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab1 light chain
Chain IDs:A (auth: L), C (auth: A), D (auth: C), E, F (auth: J), G
Chain Length:215
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The role of membrane destabilisation and protein dynamics in BAM catalysed OMP folding.
Nat Commun 12 4174 4174 (2021)
PMID: 34234105 DOI: 10.1038/s41467-021-24432-x

Abstact

The folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria is catalysed by the β-barrel assembly machinery (BAM). How lateral opening in the β-barrel of the major subunit BamA assists in OMP folding, and the contribution of membrane disruption to BAM catalysis remain unresolved. Here, we use an anti-BamA monoclonal antibody fragment (Fab1) and two disulphide-crosslinked BAM variants (lid-locked (LL), and POTRA-5-locked (P5L)) to dissect these roles. Despite being lethal in vivo, we show that all complexes catalyse folding in vitro, albeit less efficiently than wild-type BAM. CryoEM reveals that while Fab1 and BAM-P5L trap an open-barrel state, BAM-LL contains a mixture of closed and contorted, partially-open structures. Finally, all three complexes globally destabilise the lipid bilayer, while BamA does not, revealing that the BAM lipoproteins are required for this function. Together the results provide insights into the role of BAM structure and lipid dynamics in OMP folding.

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Primary Citation of related structures