7BLO image
Deposition Date 2021-01-18
Release Date 2021-03-03
Last Version Date 2025-04-09
Entry Detail
PDB ID:
7BLO
Keywords:
Title:
VPS26 dimer region of metazoan membrane-assembled retromer:SNX3 complex modelled with human proteins
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.50 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 35
Gene (Uniprot):VPS35
Chain IDs:G (auth: A), H (auth: C)
Chain Length:352
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 26A
Gene (Uniprot):VPS26A
Chain IDs:A (auth: J), D (auth: F)
Chain Length:294
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Sorting nexin-3
Chain IDs:B (auth: L), E (auth: G)
Chain Length:155
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:C-term (residues 493-54) of Wls (fitted sequence corresponds to hDMT1-II)
Chain IDs:C (auth: N), F (auth: H)
Chain Length:10
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Architecture and mechanism of metazoan retromer:SNX3 tubular coat assembly.
Sci Adv 7 ? ? (2021)
PMID: 33762348 DOI: 10.1126/sciadv.abf8598

Abstact

Retromer is a master regulator of cargo retrieval from endosomes, which is critical for many cellular processes including signaling, immunity, neuroprotection, and virus infection. The retromer core (VPS26/VPS29/VPS35) is present on cargo-transporting, tubular carriers along with a range of sorting nexins. Here, we elucidate the structural basis of membrane tubulation and coupled cargo recognition by metazoan and fungal retromer coats assembled with the non-Bin1/Amphiphysin/Rvs (BAR) sorting nexin SNX3 using cryo-electron tomography. The retromer core retains its arched, scaffolding structure but changes its mode of membrane recruitment when assembled with different SNX adaptors, allowing cargo recognition at subunit interfaces. Thus, membrane bending and cargo incorporation can be modulated to allow retromer to traffic cargoes along different cellular transport routes.

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Primary Citation of related structures