7BKE image
Deposition Date 2021-01-15
Release Date 2021-09-29
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7BKE
Keywords:
Title:
Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (heterodisulfide reductase core and mobile arm in conformational state 2, composite structure)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CoB--CoM heterodisulfide reductase iron-sulfur subunit A
Gene (Uniprot):Mhun_1838
Chain IDs:A, D (auth: a)
Chain Length:671
Number of Molecules:2
Biological Source:Methanospirillum hungatei JF-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CoB--CoM heterodisulfide reductase subunit B
Gene (Uniprot):Mhun_1837
Chain IDs:C (auth: B), H (auth: b)
Chain Length:296
Number of Molecules:2
Biological Source:Methanospirillum hungatei JF-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CoB--CoM heterodisulfide reductase subunit C
Gene (Uniprot):Mhun_1836
Chain IDs:B (auth: C), G (auth: c)
Chain Length:191
Number of Molecules:2
Biological Source:Methanospirillum hungatei JF-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase
Gene (Uniprot):Mhun_2021
Chain IDs:I (auth: D)
Chain Length:686
Number of Molecules:1
Biological Source:Methanospirillum hungatei JF-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase, beta subunit (F420)
Gene (Uniprot):Mhun_2020
Chain IDs:F (auth: E)
Chain Length:414
Number of Molecules:1
Biological Source:Methanospirillum hungatei JF-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F420-non-reducing hydrogenase subunit D
Gene (Uniprot):Mhun_1839
Chain IDs:E (auth: F)
Chain Length:140
Number of Molecules:1
Biological Source:Methanospirillum hungatei JF-1
Primary Citation
Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science 373 1151 1156 (2021)
PMID: 34516836 DOI: 10.1126/science.abg5550

Abstact

The first reaction of the methanogenic pathway from carbon dioxide (CO2) is the reduction and condensation of CO2 to formyl-methanofuran, catalyzed by formyl-methanofuran dehydrogenase (Fmd). Strongly reducing electrons for this reaction are generated by heterodisulfide reductase (Hdr) in complex with hydrogenase or formate dehydrogenase (Fdh) using a flavin-based electron-bifurcation mechanism. Here, we report enzymological and structural characterizations of Fdh-Hdr-Fmd complexes from Methanospirillum hungatei. The complexes catalyze this reaction using electrons from formate and the reduced form of the electron carrier F420. Conformational changes in HdrA mediate electron bifurcation, and polyferredoxin FmdF directly transfers electrons to the CO2 reduction site, as evidenced by methanofuran-dependent flavin-based electron bifurcation even without free ferredoxin, a diffusible electron carrier between Hdr and Fmd. Conservation of Hdr and Fmd structures suggests that this complex is common among hydrogenotrophic methanogens.

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