7BIF image
Deposition Date 2021-01-12
Release Date 2021-09-22
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7BIF
Keywords:
Title:
Crystal structure of v22WRAP-T, a 7-bladed designer protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:v22WRAP-T
Gene (Uniprot):Npun_R6612
Mutations:0
Chain IDs:A, B, C, D
Chain Length:288
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Structure and stability of the designer protein WRAP-T and its permutants.
Sci Rep 11 18867 18867 (2021)
PMID: 34552189 DOI: 10.1038/s41598-021-98391-0

Abstact

[Formula: see text]-Propeller proteins are common natural disc-like pseudo-symmetric proteins that contain multiple repeats ('blades') each consisting of a 4-stranded anti-parallel [Formula: see text]-sheet. So far, 4- to 12-bladed [Formula: see text]-propellers have been discovered in nature showing large functional and sequential variation. Using computational design approaches, we created perfectly symmetric [Formula: see text]-propellers out of natural pseudo-symmetric templates. These proteins are useful tools to study protein evolution of this very diverse fold. While the 7-bladed architecture is the most common, no symmetric 7-bladed monomer has been created and characterized so far. Here we describe such a engineered protein, based on a highly symmetric natural template, and test the effects of circular permutation on its stability. Geometrical analysis of this protein and other artificial symmetrical proteins reveals no systematic constraint that could be used to help in engineering of this fold, and suggests sequence constraints unique to each [Formula: see text]-propeller sub-family.

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