7BHF image
Entry Detail
PDB ID:
7BHF
Keywords:
Title:
DARPin_D5/Her3 domain 4 complex, orthorhombic crystals
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-01-11
Release Date:
2021-11-24
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DARPin_D5
Chain IDs:A, C
Chain Length:138
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Isoform 4 of Receptor tyrosine-protein kinase erbB-3
Chain IDs:B, D
Chain Length:150
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structures of HER3 extracellular domain 4 in complex with the designed ankyrin-repeat protein D5.
Acta Crystallogr.,Sect.F 77 192 201 (2021)
PMID: 34196609 DOI: 10.1107/S2053230X21006002

Abstact

The members of the human epidermal growth factor receptor (HER) family are among the most intensely studied oncological targets. HER3 (ErbB3), which had long been neglected, has emerged as a key oncogene, regulating the activity of other receptors and being involved in progression and tumor escape in multiple types of cancer. Designed ankyrin-repeat proteins (DARPins) serve as antibody mimetics that have proven to be useful in the clinic, in diagnostics and in research. DARPins have previously been selected against EGFR (HER1), HER2 and HER4. In particular, their combination into bivalent binders that separate or lock receptors in their inactive conformation has proved to be a promising strategy for the design of potent anticancer therapeutics. Here, the selection of DARPins targeting extracellular domain 4 of HER3 (HER3d4) is described. One of the selected DARPins, D5, in complex with HER3d4 crystallized in two closely related crystal forms that diffracted to 2.3 and 2.0 Å resolution, respectively. The DARPin D5 epitope comprises HER3d4 residues 568-577. These residues also contribute to interactions within the tethered (inactive) and extended (active) conformations of the extracellular domain of HER3.

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Primary Citation of related structures