7BHA image
Deposition Date 2021-01-11
Release Date 2021-04-21
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7BHA
Title:
Escherichia coli YtfE
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Iron-sulfur cluster repair protein YtfE
Gene (Uniprot):ytfE
Mutations:C30A C31A
Chain IDs:A, B
Chain Length:219
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Primary Citation
Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis.
Front Microbiol 12 670681 670681 (2021)
PMID: 33995335 DOI: 10.3389/fmicb.2021.670681

Abstact

Escherichia coli YtfE is a di-iron protein of the widespread Repair of Iron Centers proteins (RIC) family that has the capacity to donate iron, which is a crucial component of the biogenesis of the ubiquitous family of iron-sulfur proteins. In this work we identify in E. coli a previously unrecognized link between the YtfE protein and the major bacterial system for iron-sulfur cluster (ISC) assembly. We show that YtfE establishes protein-protein interactions with the scaffold IscU, where the transient cluster is formed, and the cysteine desulfurase IscS. Moreover, we found that promotion by YtfE of the formation of an Fe-S cluster in IscU requires two glutamates, E125 and E159 in YtfE. Both glutamates form part of the entrance of a protein channel in YtfE that links the di-iron center to the surface. In particular, E125 is crucial for the exit of iron, as a single mutation to leucine closes the channel rendering YtfE inactive for the build-up of Fe-S clusters. Hence, we provide evidence for the key role of RICs as bacterial iron donor proteins involved in the biogenesis of Fe-S clusters.

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