ISDA

Deposition Date 2021-01-08

Release Date 2021-12-15

Last Version Date 2024-11-13

Entry Detail

PDB ID:

7BGU

Keywords:

HYDROLASE

Title:

Mason-Pfizer Monkey Virus Protease mutant C7A/D26N/C106A in complex with peptidomimetic inhibitor

Biological Source:

Source Organism:

Mason-Pfizer monkey virus (Taxon ID: 11855)
synthetic construct (Taxon ID: 32630 )

Host Organism:

Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.43 Å

R-Value Free:

0.23

R-Value Work:

0.17

R-Value Observed:

0.18

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Gag-Pro-Pol polyprotein
Gene (Uniprot):gag-pro-pol
Mutations:C7A, D26N, C106A; ENGINEERED MUTATIONS
Chain IDs:A, B, C, D
Chain Length:114
Number of Molecules:4
Biological Source:Mason-Pfizer monkey virus

UniProt ID:P07572 Pfam ID:PF00077

Polymer Type:polypeptide(L)
Molecule:peptidomimetic inhibitor
Chain IDs:E (auth: G), F
Chain Length:7
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

1PE

Primary Citation

Crystal structures of inhibitor complexes of M-PMV protease with visible flap loops.

Wosicki, S, Kazmierczyk, M, Gilski, M, Zabranska, H, Pichova, I, Jaskolski, M, Wosicki, S, Gilski, M, Zabranska, H, Pichova, I, Jaskolski, M, Gilski, M, Kazmierczyk, M, Krzywda, S, Zabranska, H, Cooper, S, Popovic, Z, Khatib, F, DiMaio, F, Thompson, J, Baker, D, Pichova, I, Jaskolski, M, Miller, M, Jaskolski, M, Rao, J.K, Leis, J, Wlodawer, A, Wlodawer, A, Miller, M, Jaskolski, M, Sathyanarayana, B.K, Baldwin, E, Weber, I.T, Selk, L.M, Clawson, L, Schneider, J, Kent, S.B, Khatib, F, DiMaio, F, Cooper, S, Kazmierczyk, M, Gilski, M, Krzywda, S, Zabranska, H, Pichova, I, Thompson, J, Popovic, Z, Jaskolski, M, Baker, D.Show

Protein Sci. 30 1258 1263 (2021)

PMID: 33786913 DOI: 10.1002/pro.4072

Abstact

Mason-Pfizer monkey virus protease (PR) was crystallized in complex with two pepstatin-based inhibitors in P1 space group. In both crystal structures, the extended flap loops that lock the inhibitor/substrate over the active site, are visible in the electron density either completely or with only small gaps, providing the first observation of the conformation of the flap loops in dimeric complex form of this retropepsin. The H-bond network in the active site (with D26N mutation) differs from that reported for the P21 crystal structures and is similar to a rarely occurring system in HIV-1 PR.

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Primary Citation of related structures